Our analysis shows us that only VB.Net apps compiled with VS2008 Vb compiler cause that problem,
VB.Net assemblies generated with VS2003, VS2005 compilers and C# assemblies (vs2003, vs2005, vs2008) don't cause that problem.
We still haven't solution, please use VS2005 VB.Net compiler to compile your VB app and correctly obfuscate it.